PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015598m
Common NameEUTSA_v10015598mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MIKC_MADS
Protein Properties Length: 148aa    MW: 16956.8 Da    PI: 10.6106
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015598mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.43.2e-221359551
                     SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        +rq +fskRr g+lKKA  LS+LC aevavi+fs++gkl+ +ss
  Thhalv10015598m 13 HAQRRQSSFSKRRSGLLKKARQLSTLCKAEVAVIVFSNSGKLFQFSS 59
                     6789*****************************************96 PP

2K-box21.97.4e-091161433764
            K-box  37 hllGedLesLslkeLqqLeqqLekslkk 64 
                      hl+G++L+ +s+k Lq+Le+qL+ +l +
  Thhalv10015598m 116 HLQGKKLNIMSMKVLQHLEHQLNAALIS 143
                      99***********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.9E-26160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.544161IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-19323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-23574IPR002100Transcription factor, MADS-box
PfamPF003191.0E-201357IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MGLCKLVIKR LAHAQRRQSS FSKRRSGLLK KARQLSTLCK AEVAVIVFSN SGKLFQFSST  60
GMTQTLMRYE NYQLSTDAPL ITSKAAISHA YEISKLQERH WYGTYSPLCC QFHFPHLQGK  120
KLNIMSMKVL QHLEHQLNAA LISEKERN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A8e-18272171MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B8e-18272171MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C8e-18272171MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_D8e-18272171MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3kov_A9e-18273172Myocyte-specific enhancer factor 2A
3kov_B9e-18273172Myocyte-specific enhancer factor 2A
3kov_I9e-18273172Myocyte-specific enhancer factor 2A
3kov_J9e-18273172Myocyte-specific enhancer factor 2A
3p57_A9e-18273172Myocyte-specific enhancer factor 2A
3p57_B9e-18273172Myocyte-specific enhancer factor 2A
3p57_C9e-18273172Myocyte-specific enhancer factor 2A
3p57_D9e-18273172Myocyte-specific enhancer factor 2A
3p57_I9e-18273172Myocyte-specific enhancer factor 2A
3p57_J9e-18273172Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402118.11e-107hypothetical protein EUTSA_v10015598mg, partial
SwissprotQ392952e-45AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLV4NC981e-107V4NC98_EUTSA; Uncharacterized protein (Fragment)
STRINGBra008802.1-P3e-44(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.14e-33AGAMOUS-like 15